⚡ ♒ Rapid prokaryotic genome annotation
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Updated
Apr 10, 2024 - Perl
⚡ ♒ Rapid prokaryotic genome annotation
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A flexible pipeline for complete analysis of bacterial genomes
Bioinformatics tool to find integrons in bacterial genomes
Simple bacterial assembly and annotation pipeline
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Fast k-mer based tool for multi locus sequence typing (MLST)
Machine-learning-based general bacterial promoter prediction tool.
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Phage-Host Interaction Search Tool
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
Combining de novo and reference-guided assembly with Scaffold_builder
genome sized sequences clustering
Various scripts for efficient processing of 10k Salmonella genomes
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
Bioinformatics pipeline for nanopore sequencing data
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