SQL and SQLite builds of OWL ontologies
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Updated
Jun 1, 2024 - Python
SQL and SQLite builds of OWL ontologies
National Microbiome Data Collaborative (NMDC) unified data model
LLM-based ontological extraction tools, including SPIRES
wrapper for multiple linkml storage engines (alpha software)
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
Runtime support for linkml generated models
Linked Open Data Modeling Language
Python toolkit for SSSOM mapping format
Schema and generated objects for biolink data model and upper ontology
Data ingest application for Monarch Initiative knowledge graph using Koza
Schema repository for the Alliance of Genome Resources persistent data store
Generated documentation for SAVED data model. Due to the interaction between LinkML, JSON-LD contexts and yet-to-be-generated RDF (turtle/n-triples), this is manually compiled.
Data transformation framework for LinkML data models
Link Modeling Language (LinkML) model
Simple Standard for Sharing Ontology Mappings
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