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512 Open 7,122 Closed
512 Open 7,122 Closed
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Issues list

FindVariableFeatures of Sketch-based analysis
#9015 opened Jun 12, 2024 by BenxiaHu
getting back the original count matrix after integration
#9014 opened Jun 12, 2024 by Huimin721
join layers or not ( contradicting vignettes) standard workflow and sketch
#9013 opened Jun 12, 2024 by Flu09
1
Add a compatibility layer for VisiumV1 and VisiumV2 classes enhancement New feature or request
#9012 opened Jun 12, 2024 by ppm1337
FindVariableFeatures: Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : invalid 'x'
#9010 opened Jun 11, 2024 by changve
Normalizing per sample for abundance plots
#9009 opened Jun 11, 2024 by dianajzajac
Qusetion about SCTransform and PrepSCTIntegration
#9008 opened Jun 11, 2024 by SYSUMSD
How to integrate different samples of Visium HD data? enhancement New feature or request
#9007 opened Jun 11, 2024 by yifanfu01
About result of FindMarkers
#9006 opened Jun 11, 2024 by MinadukiSora136
FindTransferAnchors => allow mapping of features between ref and query enhancement New feature or request
#9005 opened Jun 10, 2024 by nick-youngblut
2
How does single cell RNA reference look like? Converting from Seurat to cell2location.
#9004 opened Jun 10, 2024 by 532at
Data Integration + Batch Effect Removal
#9002 opened Jun 10, 2024 by jcasadogp
Issue when subsetting merged Seurat object bug Something isn't working
#9001 opened Jun 10, 2024 by AEstebanMar
Editting Seurat Object metadata
#9000 opened Jun 9, 2024 by HappinessEricst
Uncertain workflow for differential expression testing after SC Transform v2 + Harmony integration using IntegrateLayers bug Something isn't working
#8998 opened Jun 7, 2024 by jcm6t
1
How to use high res image in Visium HD
#8996 opened Jun 7, 2024 by DaiZYlab
1
RCTD celltype result to full: wrong weights matrix input
#8995 opened Jun 7, 2024 by sunkunkun
How can I merge RDS data for specific clusters in multiple samples after removing batches？
#8994 opened Jun 7, 2024 by JWJ13164328557
CalcPerturbSig error with nn2
#8990 opened Jun 6, 2024 by mangochiral
uma application bug Something isn't working more-information-needed We need more information before this can be addressed
#8989 opened Jun 6, 2024 by MrsJae
2
FindTransferAnchors fail with caught segfault 'memory not mapped' bug Something isn't working
#8987 opened Jun 5, 2024 by r-melo
Question on sctransform and cell cycle score regression in Seurat v5
#8986 opened Jun 5, 2024 by sg3451
Error in validObject(.Object) : invalid class “LowRankMatrix” object: the supplied seed must support extract_array() bug Something isn't working
#8985 opened Jun 5, 2024 by yinshanfang
how to change the size of the circles in the legend of SpatialDimPlot?
#8984 opened Jun 5, 2024 by biobug16
Error in SpatialDimPlot() : could not find function "SpatialDimPlot"
#8983 opened Jun 5, 2024 by Anna-RNA88
ProTip! What’s not been updated in a month: updated:<2024-05-12.