tHMM is a Python3 package for clustering, visualizing, and analyzing data in the form of lineage trees. This work is now published in Communications Biology https://www.nature.com/articles/s42003-022-04208-9
$ git clone https://github.com/meyer-lab/tHMM.gitIt takes a few seconds to clone the repository.
This package is supported on macOS and Linux systems.
tHMM requires virtualenv. All other required packages can then be installed using make venv to establish a virtual environment. The Python packages that will be installed are listed in pyproject.toml, and can be directly installed using poetry install.
Please find the documentation at https://thmm.readthedocs.io.
This project is covered under the MIT License.