- estimating the alignment distances and the alignment visualization from the sequence alignment.
- use sapply to map across all the files and generate the alignments and the phylogeny and also the dna distance measures.
- You can also use this on the alignments coming from the long reads or to a specific alignments.
visualfreq("sampleexample.fasta", 10, 100)
Gaurav
Academic Staff Member
Bioinformatics
Institute for Biochemistry and Biology
University of Potsdam
Potsdam,Germany