FreeFEM v4.14

[4.14] (develop version 6/7/24)

Added

• Finite element BDM2 and BDM2ortho in test, Bug in BDM2ortho corrected the 4 sept 2014 in version: v4.13-130-g1af52457
• Conversion of matrix or transpose of matrix in int[int][int] array to get the structure of sparse matrix.
  see tutorial/sparse-matrix.edp example at end

  matrix A = va(Ph,Vh);
  int[int] a = A, at= A';
  

• a meshL finite function can be see as real function with 1, or 2 parameters

   meshL ThL = segment(10); fespace VhL(ThL,P1); VhL u= x;
   cout << u(0.5)   << endl;
   cout << u(0.5,0) << endl;
  

• Exemple to code convolution of 2 function with one with a small support
  too be not to expanxive
  see tutorial/Convolution-Sample.edp example
• Support for dense blocks in PETSc matrices
• GenEO for saddle-point examples with PCHPDDM in PETSc
• Distributed ParaView output on meshS
• Interface to mmg2d for two-dimensional mesh
• Support for Mmg parameters localParameter, -nosizreq, -hgradreq`

Changed

• PETSc 3.20.2

Deprecated

Removed

Fixed

• bug in P3pnc3d in vectorial case (thank to loic.balaziatchynillama@cea.fr )
• in segment(10,region=1,label=ll); region is now used..

Sorry the ARM version (Apple-Silicon) was wrong before due to mistake in brew library
(need to install brew gfortran), the develop version (06/07/24, FreeFEM-v4.14-60-g660dbd36-Apple-Silicon-O.dmg) is correct on Mac M2 (almost all test are OK).

The new Mac version (develop) works after security authorization (see README.md)
(see the small moving https://www.youtube.com/watch?v=SEF4PAkR51g to understand howto do )
if you do not succed please
send me a Mail to: frederic.hecht@sorbonne-universite.fr.

Remark: The dev file or with name --g*.dmg are the current develop version.

FreeFEM v4.14

[4.14]

Added

• Finite element BDM2 and BDM2ortho in test, Bug in BDM2ortho corrected the 4 sept 2014 in version: v4.13-130-g1af52457
• Conversion of matrix or transpose of matrix in int[int][int] array to get the structure of sparse matrix.
  see tutorial/sparse-matrix.edp example at end

  matrix A = va(Ph,Vh);
  int[int] a = A, at= A';
  

• a meshL finite function can be see as real function with 1, or 2 parameters

   meshL ThL = segment(10); fespace VhL(ThL,P1); VhL u= x;
   cout << u(0.5)   << endl;
   cout << u(0.5,0) << endl;
  

• Exemple to code convolution of 2 function with one with a small support
  too be not to expanxive
  see tutorial/Convolution-Sample.edp example
• Support for dense blocks in PETSc matrices
• GenEO for saddle-point examples with PCHPDDM in PETSc
• Distributed ParaView output on meshS
• Interface to mmg2d for two-dimensional mesh
• Support for Mmg parameters localParameter, -nosizreq, -hgradreq`

Changed

• PETSc 3.20.2

Deprecated

Removed

Fixed

• bug in P3pnc3d in vectorial case (thank to loic.balaziatchynillama@cea.fr )
• in segment(10,region=1,label=ll); region is now used..

FreeFEM v4.13

What's Changed

• Release v4.13 by @phtournier in #283
• PETSc v3.19.0 by @prj- in #262
• Composite FE spaces and variational forms for coupled problems with different meshes/mesh types by @phtournier in #265
• Fix METIS partitioning with one subdomain by @prj- in #247
• Add KSPSolveTranspose for PETSc by @cmd8 in #256
• Fix KSPSolveHermitianTranspose by @cmd8 in #257
• Fix Conjugations in KSPSolveHermitianTranspose by @cmd8 in #258
• Suppress cout when verbosity == 0 by @cmd8 in #259
• Fix error messages. by @bangerth in #260
• Remove obsolete unary and binary functions. by @mzf-guest in #263
• Add CodeQL workflow for GitHub code scanning by @lgtm-com in #246
• Rename functions from macro_ddm.idp by @prj- in #271
• MatNullSpace -> nullspace by @cmd8 in #276

Full Changelog: v4.12...v4.13

the New mac intel version works on Monterey system (12.6) or newer (this is the develop version)

FreeFEM v4.12

What's Changed

• PETSc 3.18.0 by @prj- in #238
• Fixed a bug of setenv in shell.edp by @zhaog6 in #232
• Version v4.12 by @prj- in #244
• Version win64 for x86 not really tested
• FreeFem++-4.12-win11-x64 tested and compile under window 11 x64
  Full Changelog: v4.11...v4.12
• the Apple-M1 version is correct but warning on Ventura (13.0) see menu Security and confidentiality in Preferences System to unlock the application.

FreeFEM v4.11

Remark on Apple version, the two versions (M1, intel) are in test (full version with PETSC, mpi, all linear solve except PARDISO)
There is a problem of installation on arm and Intel version with external dynamic lib (.dylib)
I put a d version to solve dylib each
Follow the README.md in dmg file (in version -c) correction of install-app.sh script

What's Changed

• Fixed the missing character in dirname by @zhaog6 in #214
• Housekeeping by @prj- in #215
• Ablity to use .pvtu files for parallel postprocessing with ParaView by @mohd-afeef-badri in #210
• Replaced several occurrences of "Foobar" by "FreeFEM" by @f-florian in #222
• add (EPS/PEP/NEP)GetErrorEstimate by @aszaboa in #223
• Version v4.11 by @prj- in #224

New Contributors

• @mohd-afeef-badri made their first contribution in #210
• @f-florian made their first contribution in #222

Full Changelog: v4.10...v4.11

FreeFEM v4.10

Added

• ridgeangle named parameter in ExtractMeshL in msh3 plugin
• DG formulation in 1d :
  add integral of all border of element : intallBE(ThL) and unified the notation by adding
  intallBE(ThS) , intallBE(Th2), intallBE(Th3)
nuVertex of now the vertex number of element in intallBE0d integral
  BoundaryBE, InternalBE to know if border element (BE) is on true boundary of not.
  update nElementonB in case on no manifold data (value greater > 2) in meshL, MeshS case ..
  add code to use jump, mean of test functuon on MeshL case. ( not in mesh3 ) to compute RHS.
• add getcwd() function in shell plugin to ghet the current working dir
• add nuVertex to get the vextex on element in some int?

Changed

• PETSc 3.16.1

Deprecated

• SLEPc and SLEPc-complex have been part of PETSc and PETSc-complex for multiple releases and are now deprecated

Fixed

• examples/potential.edp correct problem in times loops and BC
• tutorial/mortar-DN-4.edp correct problem of region number in meshL
• fix problem in Curve mesh and intallBE , vertex number is wrong
• portability issue on arm64-apple with make petsc-slepc
• fix assertion failure with transfer and transferMat with some finite elements

What's Changed

• Overloading the modulo operator for doubles and longs by @m-schindler in #174
• other directory no longer there by @bkmgit in #177
• fix typo by @bkmgit in #180
• Find petsc on Debian system. by @mzf-guest in #189
• Fix spelling errors in binaries. by @mzf-guest in #188
• Fix executable path in ffmaster for Linux. by @mzf-guest in #190
• PEP example by @aszaboa in #191
• Remove unnecessary array allocations and devil numbers by @zhaog6 in #197
• Develop by @lcirrottola in #199
• Petsc htool by @prj- in #182
• Portability fix for arm64-apple by @prj- in #207
• Version v4.10 by @prj- in #208

New Contributors

• @m-schindler made their first contribution in #174
• @bkmgit made their first contribution in #177
• @mzf-guest made their first contribution in #189
• @aszaboa made their first contribution in #191

Full Changelog: v4.9...v4.10

FreeFEM v4.9

Added

• add P3 lagrange finite element on meshS and meshS
• add new plugin meshtoolto add tool to compute the number of connected components of a all kind of mesh
  (mesh,mesh3,meshS,meshL) with 2 kind of connected components ones on interior part of the mesh (default) ans
  secondly on the closure of the mesh (see examples/hpddm/bConnectedComponents.edp )
  add functions int[int] In=iminP1K(Th,u) or int[int] Ix=imaxP1K(Th,u) get the array min/max of value u[i]
  where i is vertex number on each element k, so we have u[Im[k]] = min u[i]/ i in k;
• add in plugin bfstream to to read binary int (4 bytes) to read fortran file and try to pull tools to share the endiannes
  in progress
• add gluemesh of array of MeshL and MeshS type
• interface to PC_MG_GALERKIN_BOTH
• Kronecker product of two sparse matrices matrix C = kron(A, B)
• add lot of finite element on Mesh3, MeshS, MeshL of Discontinous Galerling Element
  in 3d : P1dc3d, P2dc3d, P3dc3d, P4dc3d , P0edge3d ,P0edgedc3d , P0face3d ,P0facedc3d , P0VF3d ,P0VFdc3d ,
  on Surface : P1dcS, P2dcS, P3dcS, P4dcS , P0edgeS ,P0edgedcS , P0VFS ,P0VFdcS,
  on Curve : P1dcL, P2dcL, P3dcL, P4dcL , P0VFL ,P0VFdcL
  remark; the associated generic name existe of P1dc, P2dc, P0edge, P0VF and all dc finite element corresponding to
  no continuity across element.
• add code of intallfaces to do Discontinous Galerkin formulation in 3d (in test FH.)

Changed

• Now the order to find MPI in configure is first if you have PETSC then take MPI from PETSc
  otherwise use previous method
• on MeshL defined with buildmeshL now the default label are 2k-1 (resp. 2k) for the begin (resp. end) of curve
  where k is the order of curve use in buildmeshL. So if you have one curve the labels are 1 and 2.
  And new the element label are te region number not the label.
  This element are not really test so be carfull.
• PETSc 3.15.0

Fixed

• bug in Find triangle contening point in 2d (border case),
  int Mesh::DataFindBoundary::Find(R2 PP,R *l,int & outside) const
  the parameter l not correclty return due to local variable.
• set CFLAGS=-Wno-implicit-function-declaration to complie with Apple clang version 12.0.0 (clang-1200.0.32.29)
  to remove following error: implicit declaration of function
  correct 3dCurve/basicGlue.edpand add missing test
• bugs in SLEPc SVDSolve() with a rectangular Mat
• bugs in nElementonB for DG 3d formulation.

FreeFEM v4.8

Added

• Bilaplacian example using Morley FE with PETSc, see examples/hpddm/bilaplacian-2d-PETSc.edp
• Oseen problem preconditioned by PCD, see examples/hpddm/oseen-2d-PETSc.edp
• SLEPc polynomial eigenvalue solver PEPSolve()
• add trivail example to check periodic boundary condition on meshS , meshL , mesh3
  examples/3d/periodic3.edp examples/3dSurf/periodicS.edp
  examples/3dCurve/periodicL.edp

Changed

• PETSc version 3.14.2
• Mmg version 5.5.2
• link of ffglut so change in configure.ac and Makefile.am LIBS -> FF_LIBS and LIBS become empty
  to remove default libs
• change number of save plot in ffglut from 10 to 20 for O. Pironneau

Fixed

• some memory leaks
• the periodic boundary condition have wrong before first a sementic level of MeshS and MeshL case.
  the new syntexe is for example:
  meshL Tl=segment(10); fespace Vl(Tl,P1,periodic=[[1],[2]]);
  meshS Th=square3(10,10,[x2pi,y2pi]); fespace Vh2(Th,P1,periodic=[[1,x],[3,x],[2,y],[4,y]]);
• fixed '*' keyboard trick, to keep the viewpoint in ffglut or not.

FreeFEM v4.7-1

Changed

• change the language definition to use type as a construction function with named arguments for bem plugin
• PETSc version 3.14.0
• ARPACK compiled by SLEPc
• Mmg version 5.5.0
• -std=c++14 instead of -std=c++11 when possible

Removed

• plugins thresholdings, symmetrizeCSR, and fflapack and associed example

Fixed

• problem compilation with gfortran-10 of arpack and mumps (add -fallow-argument-mismatch flags)

FreeFEM v4.7

Added

• add Ns normal vector in R^3 on meshS (normal of the surface) of current point (to day Ns of [x,y,0] plan is [0,0,-1]) no be compatibe to exterior normal.
• add Tl tangent vector in R^3 on meshL (tangent vector of the line/curve) of current point
• compile ffmaster / ffslave example under windows (thanks to johann@ifado.de)
• Boolean parameter spiltpbedge in buildmesh to split in to edge with two boundary vertices
• interface to PETSc DMPlex, see examples/hpddm/DMPlex-PETSc.edp
• function MatDestroy
• function MatPtAP and transferMat for parallel interpolation between non-matching grids, see examples/hpddm/PtAP-2d-PETSc.edp or examples/hpddm/diffusion-mg-2d-PETSc.edp
• preliminary interface to SVDSolve from SLEPc to compute singular value decompositions, see examples/hpddm/mf-2d-SLEPc.edp or examples/hpddm/helmholtz-2d-SLEPc-complex.edp
• preliminary interface to NEPSolve from SLEPc to solve nonlinear eigenvalue problems, see examples/hpddm/nonlinear-2d-SLEPc-complex.edp
• transpose parameter when constructing a Mat for defining a matrix-free transposed operation
• interface to PetscMemoryGetCurrentUsage
• add P2b, RT0, RT1 surface FE (P2bS, RT0S, RT1S))
• add operator interpolate (2d->3d surface)
• add operator x = A'*b; where x, b are array and A 2 dim array (full matrix) and generate an error in case of b'*A or b'*A expression
• function MatLoad to load a PETSc Mat from disk, see examples/hpddm/MatLoad-PETSc.edp
• possibility to assemble a symmetric HMatrix<complex> and to densify a HMatrix<complex> into a Mat<complex>

Changed

• moved Htool to its new GitHub location
• ScaLAPACK and MUMPS are not compiled by PETSc anymore if there is no Fortran compiler
• MPICH is compiled by PETSc if no MPI is detected during configure, see https://community.freefem.org/t/feature-request-use-download-mpich-on-ubuntu/407
• PETSc version 3.13.5
• force --with-cudac=0 in make petsc-slepc, see #141
• change DSL keyword P1dc3dL->P1dcL and P1dc3dS->P1dcS
• rename view, hasType, changeSchur to respectively ObjectView, HasType, and ChangeSchur

Deprecated

• rename changeNumbering, globalNumbering, originalNumbering, changeOperator, destroyRecycling, and attachCoarseOperator to respectively ChangeNumbering, GlobalNumbering, OriginalNumbering, ChangeOperator, DestroyRecycling, and AttachCoarseOperator
• Nt the normal vector of the current (wrong on meshL) use Ns pr Tl

Removed

• augmentation routine from the PETSc plugin
• MPIF77 variable

Fixed

• lot of mistake in MeshL element add a example o ckeck lot of thing tutomesh1d.edp
• fixed problem of change of mesh when rebuild 2d mesh with builmesh, .... (Thank to P. Jovilet to points this problem)
• missing METIS library when using SuiteSparse compiled by PETSc
• missing -fno-stack-protector when building PETSc on Windows, see https://community.freefem.org/t/error-loading-complex-petsc-slepc-library/370
• fixed ffglut for the plotting of FE array solution
• fixed ffglut bug on MacOS Catalina , draw inn only half windows screen (Apple Bug ???)
• correct P0VF finite element
• abs function of array